Laboratory PCR Testing Systems and Regulated Software Practices During the COVID-19 Response

Authors

  • Saket Mishra Associate Director, Thermo Fisher Scientific, South San Francisco. Author

DOI:

https://doi.org/10.63282/3117-5481/AIJCST-V4I2P105

Keywords:

Laboratory Automation, PCR Testing, Regulated Software, CI/CD, Quality Assurance, IVDR, FDA, Data Pipeline, Verification and Validation

Abstract

The analysis focuses on the testing gap that emerged when public-health authorities needed rapid scale-up of sensitive molecular diagnostics while preserving traceability, safety, and regulatory compliance [1], [2]. The scope spans modular system design, laboratory automation, software configuration management, CI/CD for regulated diagnostic software, and secure data pipelines supporting end-to-end workflows. Key technical contributions highlighted include modular architecture patterns enabling scalable capacity and redundancy, laboratory automation strategies that reduce manual touchpoints, CI/CD approaches adapted to regulated software environments, and secure, auditable data pipelines that align with cybersecurity guidance [3]. Outcomes and implications are presented in anonymized form, emphasizing high-throughput capability improvements, verification and validation (V&V) success, and achievement of regulatory milestones under emergency and routine pathways [2], [4]. The review is relevant to public-health testing networks preparing for future emergencies and to organizations harmonizing software engineering practices with IVDR and FDA EUA expectations [2], [4]. Outcomes and implications are presented in anonymized form, emphasizing high-throughput capability improvements, verification and validation (V&V) success, and achievement of regulatory milestones under emergency and routine pathways [2], [4]. The review is relevant to public-health testing networks preparing for future emergencies and to organizations harmonizing software engineering practices with IVDR and FDA EUA expectations [2], [4].

References

[1] World Health Organization, “Laboratory testing strategy recommendations for covid-19: Interim guidance,” https://www.who. int/emergencies/diseases/novel-coronavirus-2019/technical-guidance/ laboratory-guidance/, 2020.

[2] European Commission, “Regulation (eu) 2017/746 of the european parliament and of the council on in vitro diagnostic medical devices (IVDR),” https://eur-lex.europa.eu/legal-content/EN/TXT/?uri= CELEX:32017R0746, 2017.

[3] National Institute of Standards and Technology, “Framework for improving critical infrastructure cybersecurity, version 1.1,” https://www.nist. gov/cyberframework, 2018.

[4] B. N. Rome, J. Avorn, and Others, “Emergency use authorizations of covid-19–related medical products,” JAMA, vol. 326, no. 16, pp. 1607– 1608, 2021. [Online]. Available: https://pmc.ncbi.nlm.nih.gov/articles/ PMC8689422/

[5] K. Sethuraman and Others, “Covid-19 testing, timeliness and positivity from ICMR’s laboratory network in India,” Indian Journal of Medical Research, vol. 154, no. 5, pp. 620–628, 2021. [Online]. Available: https://pmc.ncbi.nlm.nih.gov/articles/PMC8641892/

[6] Centers for Disease Control and Prevention, “Interim guidelines for collecting, handling, and testing clinical specimens from persons for coronavirus disease 2019 (covid-19),” https://stacks.cdc.gov/view/cdc/85935, 2020.

[7] World Health Organization, “Laboratory biosafety guidance related to coronavirus disease (covid-19): Interim guidance,” https://www.who.int/emergencies/diseases/novel-coronavirus-2019/ technical-guidance/laboratory-guidance, 2020.

[8] World Health Organization, “Laboratory testing strategy recommendations for COVID-19: Interim guidance,” 2020. [Online]. Available: https://iris.who.int/items/3771dbbe-0afc-4bf2-8d22-89800018b03f

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Published

2022-03-19

Issue

Section

Articles

How to Cite

[1]
S. Mishra, “Laboratory PCR Testing Systems and Regulated Software Practices During the COVID-19 Response”, AIJCST, vol. 4, no. 2, pp. 37–48, Mar. 2022, doi: 10.63282/3117-5481/AIJCST-V4I2P105.

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